Please find attached my history. I was running some samples and none of them were able to load the medaka section of the workflow.
AB1 Combined parent sample: Galaxy
Hi Newhe,
- The error in your history (see below) suggests that the tool ran out of memory.
- Galaxy team was able to increase the memory for the medaka consensus pipeline tool.
- I re-ran your workflow with updated memory and it worked, so go ahead and try re-running it yourself, as the tool with expanded memory should work now. Note, the tool took ~1.5 hours to complete.
- Of note,
medakais a tool to create consensus sequences and variant calls from nanopore sequencing data. Your sequencing data is PacBio data and does NOT need pre-processing by medaka.